deepTools: NGS Data Analysis Toolkit Overview deepTools is a comprehensive suite of Python command-line tools designed for processing and analyzing high-throughput sequencing data. Use deepTools to perform quality control, normalize data, compare samples, and generate publication-quality visualizations for ChIP-seq, RNA-seq, ATAC-seq, MNase-seq, and other NGS experiments. Core capabilities: - Convert BAM alignments to normalized coverage tracks (bigWig/bedGraph) - Quality control assessment (fingerprint, correlation, coverage) - Sample comparison and correlation analysis - Heatmap and profile…