graphify — Code Navigation Layer Structural index of the codebase. Know what exists, where, and how it connects — before you grep. Requires CLI: (uses Bun runtime). Manual updates only. The graph does not refresh on its own — you (or the user) run or when you want a fresh index. This avoids write conflicts in git worktrees and other multi-session setups. First-time setup (one-time per machine) Then, once per project: After that, refresh manually whenever the index drifts from the code (see below). Commands — Build index (first time, or full rebuild) Scans all source files, extracts AST struct…