MFA Pipeline Orchestrator Overview Coordinates all mfa-agent sub-agents in sequence, tracking progress via markdown files so any failed step can be resumed independently. Full pipeline: Workflow Step 0: Parse User Request Extract and record in : - Model source (BIGG ID or custom) - Organism and condition (aerobic/anaerobic, carbon source, concentration) - Objective reaction (biomass or product) - Gene knockouts to apply - Analysis goals (essentiality, phase plane, yield optimisation, WT vs. mutant comparison) - Target product (if yield analysis requested) Step 1: Invoke model-builder Provide:…