Salmon Quantifier Skill Purpose Enable Salmon pseudo-alignment for fast and accurate transcript quantification. Capabilities - Selective alignment mode - GC bias correction - Mapping rate assessment - Bootstrap uncertainty estimation - Multi-mapping resolution - Decoy-aware indexing Usage Guidelines - Build decoy-aware indices for accuracy - Enable GC bias correction - Use selective alignment for improved accuracy - Generate bootstraps for uncertainty estimation - Validate mapping rates against expectations - Document index and parameter versions Dependencies - Salmon - kallisto - RSEM Proces…