Samtools BAM Processor Skill Purpose Provide BAM/SAM file manipulation capabilities for sorting, indexing, filtering, and extracting alignment data. Capabilities - BAM sorting and indexing - Duplicate marking and removal - Alignment statistics generation - Region extraction and filtering - Read group management - Format conversion (SAM/BAM/CRAM) Usage Guidelines - Sort and index BAM files for efficient access - Mark or remove duplicates based on protocol - Generate alignment statistics for quality assessment - Extract regions of interest for targeted analysis - Manage read groups for multi-sa…