Scanpy: Single-Cell Analysis Overview Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for complete single-cell workflows including quality control, normalization, dimensionality reduction, clustering, marker gene identification, visualization, and trajectory analysis. When to Use This Skill This skill should be used when: - Analyzing single-cell RNA-seq data (.h5ad, 10X, CSV formats) - Performing quality control on scRNA-seq datasets - Creating UMAP, t-SNE, or PCA visualizations - Identifying cell clusters and finding marker genes…