Snakemake Workflow Manager Skill Purpose Enable Snakemake workflow management for rule-based pipeline execution. Capabilities - DAG-based workflow execution - Cluster/cloud execution - Conda environment management - Checkpointing and resume - Benchmark collection - Report generation Usage Guidelines - Define rules with clear inputs/outputs - Use Conda for environment management - Configure for cluster execution - Enable checkpointing for large workflows - Collect benchmarks for optimization - Generate workflow reports Dependencies - Snakemake - Conda - Bioconda Process Integration - Reproduci…