Epigenomics and Chromatin Accessibility Research NOT for (use other skills instead) - Methylation array data processing (CpG beta values, differential methylation) - Use - RNA-seq differential expression - Use - GWAS variant interpretation - Use - Variant functional annotation from VCF - Use --- Reasoning: Classify the Question First Before calling any tool, identify which question type you're answering. Each maps to a different tool set. (a) Which regulatory elements exist at a locus? Use UCSC get encode cCREs (region-based) or SCREEN get regulatory elements (gene-based). Then check ENCODE g…