Phylogenetics and Sequence Analysis RULE ZERO — Check for pre-computed results FIRST Before following any instruction below, scan the data folder for: - / (BUSCO single-copy ortholog phylogenetics) → these contain the pre-computed alignments ( ) and trees ( ) from the original analysis. Use these directly with PhyKIT (see "BUSCO scogs questions" below). Re-running BUSCO → MAFFT → IQ-TREE from files takes 1–6 hours AND produces slightly different numbers due to seed/version drift. - → read with and cite its cell outputs as the authoritative answer - Pre-computed result files (CSV/TSV with name…